资 源 简 介
Several RNA and protein volume calculation tools including:
Cavity Extractor — extracts the cavities for a given probe radius
Channel Extractor — extracts a particular channel from the solvent
FSV Calculator — calculates the Fractional Solvent Volume
Solvent Extractor — extracts the all of the solvent
Tunnel Extractor — extracts the ribosomal exit tunnel from the H. marismortui structure
VDW Calculator — calculate the van der Waals volume and surface area
Volume Calculator — calculate the volume and surface area for any probe radius
REFERENCES
NR Voss, M Gerstein, TA Steitz, PB Moore. "The geometry of the ribosomal polypeptide exit tunnel." J Mol Biol. v360 (4): 2006, pp. 893-906. download pdf Pubmed ID: 16784753
