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What is JPrIME?
JPrIME is a Java library with tools for phylogenetics. It is a complement to the the original C++ library PrIME developed by people in computational biology at KTH and Stockholm University, spearheaded by Jens Lagergren, Lars Arvestad and Bengt Sennblad. Large parts of JPrIME can be attributed to Joel Sjöstrand. More recent contributors are Mehmood Alam Khan, Owais Mahmudi, Ikram Ullah, Raja Hashim Ali, and Sayyed Auwn Muhammad.
PrIME and JPrIME have an emphasis on probabilistic phylogenetic models that typically employ a Markov-chain Monte Carlo (MCMC) framework.
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