资 源 简 介
Background
SCOPE++ is a C++-based program for accurately identifying homopolymer in cDNA sequences using Hidden Markov Models. This can be extended to trimming poly(A)/poly(T) tails, or identifying A,C,G,T,or N homopolymer sequences.
Getting Started
gunzip SCOPE.tar.gztar -xf SCOPE.tar
To compile the executable run the following
make
To test if the executable is working
./SCOPE++ -i test.fa -o test_folder
An Arabidopsis dataset for testing can be found at the following link
http://conifergdb.muohio.edu/data/release/ArabidopsisIlluminapolya.fastq.tgz
Don"t forget to consult the README for more information
