资 源 简 介
NG-STRider
A tool to infer Simple Tandem Repeat (STR) alleles from high throughput genomic sequencing data.
Requires Python 2.5+ and a Linux operating system.
Using Pysam (SAMTools API for Python), NG-STRIder takes a BAM file as input and returns inferred alleles for the 13 CODIS STR loci.
Probe regions for analysis are customizable -- see the documentation for details.
Questions and comments are always welcome!
Documentation is available in the archived package, or through the wiki.
Resources
Pysam
SAMtools
STRBase
UCSC Genome Browser Downloads
