资 源 简 介
PUGSVM (Phenotypic Up-regulated Gene Support Vector Machine) is a caBIGTM (cancer Biomedical Informatics Grid) analytical tool for multiclass gene selection and classification. Developed under caBIG"s In Silico Research Centers of Excellence (ISRCE) Program, PUGSVM addresses the problem of imbalanced class separability, small sample size and high gene space dimensionality, where multiclass gene markers are defined by the union of one-versus-everyone phenotypic up-regulated genes, and used by a well-matched one-versus-rest support vector machine. PUGSVM provides a simpler yet more accurate strategy to identify statistically-reproducible mechanistic marker genes for characterization of heterogeneous diseases.
文 件 列 表
PUGSVM_Java_WINDOWS_v1.0
Data_Example
Functions
PugOvrSvmJNI.bat
README_3.TXT
Data_Example
Loi_GeneExpression.txt
Loi_GeneSymbols.txt
Loi_Labels.txt
phenotype for group comparison.txt
PUG-OVRSVM_OVERALL_RESULT_10-15.txt
PUG-SVM-RESULT_10.txt
PUG-SVM-RESULT_11.txt
PUG-SVM-RESULT_12.txt
PUG-SVM-RESULT_13.txt
PUG-SVM-RESULT_14.txt
PUG-SVM-RESULT_15.txt
SampleConfig.txt
