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iqseq

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IQSeq is a tool for isoform quantification with RNA-seq data. Given isoform annotation and alignment of RNA-seq reads, it will use EM algorithm to infer the most probable expression level for each isoform of a gene. Simulation modules have also been developed and will be added to the next version of release. IQSeq is developed in Gerstein lab @ Yale. Please check out a list of our RNA-seq tools.

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IQSeq
solve
common
boost_1_34_1
jdu_source_collection
cppunit
gsl
sim_iso
pre-process
README
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