资 源 简 介
FILMRED: Finding Long and Multiple Repeats with Edit Distance
FilmRed is a tool which detects long similar fragments occurring two or more times in a set of biological sequences (repeats).
FilmRed consists of a filtering phase performed by TUIUIU as a preprocessing step, and of a successive inference phase which uses the
information gathered by the filter.
FilmRed is the first tool that can deal with repeats occurring possibly several times, that have length of hundreds or thousands bases, and
whose occurrences may differ in even more than 10 % of their positions in terms of substitutions and indels.
Installation
Download FILMRED
Unzip filmred.zip
Read the README file in the FILMRED dir for information about the usage.
References
M. Federico, P. Peterlongo, N. Pisanti, M.-F. Sagot.
Finding Long and Multiple Repeats with Edit Distance,
Proceedings of the Prague Stringology Conference 2
