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New Update (July 24, 2011): Added creating of external index to allow quick loading of large files that have already been indexed.
Update (July 10, 2011): Added support for Standard Flowgram Format (SFF) files used by 454 and Ion Torrent. Shows read name, sequence, and quality (Phred+33). Available for testing from the Downloads page.
Update (June 14, 2011): Added support for FASTQ files. Also, it detects if the FASTQ file was generated by CASAVA 1.8 and expands the header line into machine name, lane, xy coords, etc.
Update (June 06, 2011): Added support for VCF files. The VCF file can be an uncompressed text file or a BGZF-compressed binary file, which is how the data is stored in the 1000 Genomes Project.
Update (May 31, 2011): Good news for those who have been waiting for a Windows version of BAMseek. I have been working on a cross platform BAM/S
